Variational algorithms to remove stationary noise. Application to microscopy imaging. J. Fehrenbach, P. Weiss and C. Lorenzo, IEEE Image Processing Vol. 21, Issue 10, pages 4420-4430 (2012). These codes can be used for academic research, please cite this paper.
Matlab (CUDA): (github)
Python (by Patrick Quemere): (github)
Fiji plugin, graphical (by Léo Mouly): (plugin, 14M) (documentation) (test images)
Fiji plugin, macro/non-graphical (by Benjamin Font): (plugin 2D) (plugin 3D) (macro example 2D) (macro example 3D) (documentation)
Fiji plugin, GPU (by Jean Eymerie): (github)
Structure tensor-based analysis of cells and nuclei organization in tissues. W. Zhang, J. Fehrenbach, A. Desmaison, V. Lobjois, B. Ducommun, P. Weiss, submitted (2014).
(writing CUDA programs with Matlab: comparisons for denoising) (toolbox on github)